Diagnosing rhizoctonia hypocotyl rot in grain legumes
Strains of the soil-borne fungus Rhizoctonia solani that cause hypocotyl rot in all lupin species and most other crop and pasture legumes in WA. Infection incidence is generally low, but when bad can significantly reduce plant establishment. Pulse crops are generally rarely affected as they are grown on heavier textured soils, but the disease has been seen in chickpeas.
What to look for
- Seedling death and poor early growth, that is worst on deep sown plants on sandy soils.
- Diseased plants occur generally as individual plants throughout the crop but may have a clumped distribution with several seedlings in a row showing symptoms.
Paddock
- Reddish-brown sunken lesions on the hypocotyl.
- Seedlings may rot before emergence.
- From emergence to the 8-leaf stage, infected seedlings wilt and die as the lesions grow and eventually rot through the hypocotyl.
- Infected plants that survive past the 8-10-leaf point often remain stunted and are less productive than healthy plants.
Plant
What else could it be
| Condition | Similarities | Differences |
|---|---|---|
| Diagnosing rhizoctonia ZG6 in narrow-leafed lupins | Reddish-brown hypocotyl lesions | Plants also have red-brown root lesions (rare). |
| Diagnosing pleiochaeta root rot in narrow-leafed lupins | Stunted, dying seedlings. | Dark-brown rather than red-brown root lesions, no hypocotyl lesions. |
Where does it occur?
- The fungus is more active with warm soil temperatures and will be more prevalent in early sown crops.
- Disease is worse after legume pastures that host the disease.
- Damage to seedlings by presowing herbicides can also increase incidence of hypocotyl rot.
- Deep sowing increases the length of the hypocotyl and exposes more tissue to possible infection
Where did it come from?
Contaminated soil
- This strain of Rhizoctonia fungus infect the hypocotyls of many species of crop and pasture legume but cause negligible damage to cereals.
- The fungus can survive in soil in the absence of legumes and can still infect lupin crops after two or more cereal crops.
- After the break of the season the fungus grows out to infect hypocotyls of lupin plants soon after germination.
- Plants are most susceptible in the first two weeks after germination.
Management strategies
Rotation
- Rotate crops because the disease most often occurs in lupin after a legume pasture.
- Avoid sowing very early into warm drying soils in paddocks with known disease risk, particularly after legume pastures.
- Avoid sowing lupins less than 24 hours after applying glyphosate in disease prone paddocks.
- Shallow sowing reduces hypocotyl exposure to the disease.
- Increase seed rates in disease prone paddocks by 10-25% to compensate for loss of seedlings during establishment.
- Both iprodione- or procymidone-based seed dressings, which are applied for brown spot control, can reduce the severity of hypocotyl rot.
- Cultivation will not reduce the disease.
See also
Where to go for expert help
Page last updated: Friday, 29 May 2015 - 2:00pm